EPI2ME: bioinformatics for all levels of expertise
EPI2ME breaks the bioinformatics paradigm by enabling anyone to analyse their own data.
EPI2ME provides best practice bioinformatics analyses for nanopore sequencing
- Simply and easily analyse your sequencing data
- Transparent: all our analyses are open source
- No need to upload your data to the cloud
The first EPI2ME Hackathon![EPI2ME Team]()
It hasn't been long since we held the inaugural EPI2ME hackathon in Mainz, Germany on the 4th March…
March 26, 2024
4 min
A guide to reviewing BAM files
In the world of sequencing data analysis, automation reigns supreme.
Standardised workflows, such…
March 04, 2024
8 min
Benchmarking performance with sensitivity, specificity, precision and recall
You just finished reading the paper of the latest and greatest new bioinformatic tool.
It promises…
February 19, 2024
10 min
Simulating sequencing datasets
Bioinformatics tools and pipelines, as with any analysis methods, need to be tested to ensure they…
March 18, 2024
12 min
Singularity for bioinformatics![Neil Horner]()
Have you ever tried downloading a new shiny software tool from GitHub, keen to run your test dataset…
February 26, 2024
7 min
Comparing sequences with dot plots![Sarah Griffiths]()
If you had to make a list of the most valuable and insightful ways of visualising sequence data…
February 05, 2024
6 min
How to build and use databases to run wf-metagenomics and wf-16s offline
Headed for the unknown like Amundsen in the Antarctic? Determined to unveil the vast microbial world…
October 17, 2023
7 min
EPI2ME 24.03-01 Release![Stephen Rudd]()
Dear Nanopore Community, We are delighted to release a mammoth collection of updates and…
March 06, 2024
2 min
EPI2ME 24.02-01 Release![Stephen Rudd]()
Dear Nanopore Community, We are delighted to release a magnificent collection of updates and…
February 07, 2024
2 min
Bed bugs![Chris Wright]()
(Yes, I know that's not a bed bug; its a coconut rhinoceros beetle.) The EPI2ME team is happy to…
January 19, 2024
3 min
Updated Tumor Normal Pair Benchmark Dataset![Sarah Griffiths]()
We are pleased to announce an updated data release for the
COLO829 / COLO829BL
tumour/normal pair…
March 07, 2024
1 min
An experimental extremely high-accuracy, ultra-long sequencing kit
We are pleased to announce a new experimental dataset comprising extremely high accuracy,
ultra-long…
December 06, 2023
1 min
Sequencing Genome in a Bottle samples
We are pleased to announce the release of a new addition to the Oxford Nanopore
Open Data project…
May 26, 2023
2 min
Sequencing A Tumor Normal Pair with Ligation Sequencing Kit V14
We are pleased to announce the release of a new addition to the Oxford Nanopore
Open Data project…
May 12, 2023
2 min
Information
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